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Multiple Choice
At pH 6.8, which of the following peptides is least likely to form an α-helix? Peptide # 1: RSEDNFGAPKSILWE Peptide # 2: DQKASVEMAVRNSGK
A
Peptide # 1.
B
Peptide # 2.
C
Both peptides are equally likely to form an α-helix.
D
Neither peptide is likely to form an α-helix.
Verified step by step guidance
1
Identify the amino acids in each peptide that are known to disrupt α-helix formation. Common helix breakers include proline (P) and glycine (G).
Examine Peptide #1: RSEDNFGAPKSILWE. Note the presence of proline (P) and glycine (G), which are known to disrupt α-helix formation.
Examine Peptide #2: DQKASVEMAVRNSGK. Check for the presence of proline (P) and glycine (G). This peptide does not contain proline, and glycine is less frequent.
Consider the overall charge and side chain interactions at pH 6.8. Peptide #1 has a higher likelihood of unfavorable interactions due to the presence of charged residues like R (arginine) and E (glutamic acid) in close proximity.
Conclude that Peptide #1 is less likely to form an α-helix due to the presence of helix-breaking residues and potential for disruptive side chain interactions.