11. Translation

Third-base wobble allows some tRNAs to recognize more than one mRNA codon. Based on this chapter's discussion of wobble, what is the minimal number of tRNA molecules necessary to recognize the following amino acids?

isoleucine

Third-base wobble allows some tRNAs to recognize more than one mRNA codon. Based on this chapter's discussion of wobble, what is the minimal number of tRNA molecules necessary to recognize the following amino acids?

arginine

Third-base wobble allows some tRNAs to recognize more than one mRNA codon. Based on this chapter's discussion of wobble, what is the minimal number of tRNA molecules necessary to recognize the following amino acids?

leucine

A short RNA molecule was isolated that demonstrated a hyperchromic shift (see Chapter 10), indicating secondary structure. Its sequence was determined to be

     5'-AGGCGCCGACUCUACU-3'

If the molecule were a tRNA fragment containing a CGA anticodon, what would the corresponding codon be?

The genetic code contains 61 codons to specify the 20 common amino acids. Many organisms carry fewer than 61 different tRNA genes in their genomes. These genomes take advantage of isoaccepting tRNAs and the rules governing third-base wobble to encode fewer than 61 tRNA genes. Use these rules to calculate the minimal number of tRNA genes required to specify all 20 of the common amino acids.

Refer to Figure 13.7 to respond to the following:

Shown here is a hypothetical viral mRNA sequence:

 5'-AUGCAUACCUAUGAGACCCUUGGA-3'

Assuming that it could arise from overlapping genes, how many different polypeptide sequences can be produced? What are the sequences?

Most proteins have more leucine than histidine residues, but more histidine than tryptophan residues. Correlate the number of codons for these three amino acids with this information.

In an experiment to decipher the genetic code, a poly-AC mRNA (ACACACAC...) is synthesized. What pattern of amino acids would appear if this sequence were to be translated by a mechanism that reads the genetic code as

a quadruplet with overlaps?

In an experiment to decipher the genetic code, a poly-AC mRNA (ACACACAC...) is synthesized. What pattern of amino acids would appear if this sequence were to be translated by a mechanism that reads the genetic code as

a triplet with overlaps?

In an experiment to decipher the genetic code, a poly-AC mRNA (ACACACAC...) is synthesized. What pattern of amino acids would appear if this sequence were to be translated by a mechanism that reads the genetic code as

a triplet without overlaps?

In an experiment to decipher the genetic code, a poly-AC mRNA (ACACACAC...) is synthesized. What pattern of amino acids would appear if this sequence were to be translated by a mechanism that reads the genetic code as

a doublet with overlaps?

In an experiment to decipher the genetic code, a poly-AC mRNA (ACACACAC...) is synthesized. What pattern of amino acids would appear if this sequence were to be translated by a mechanism that reads the genetic code as

a doublet without overlaps?

The amino acid sequence of a portion of a polypeptide is
N...Cys-Pro-Ala-Met-Gly-His-Lys...C

Give the DNA template and coding strand sequences corresponding to the mRNA. Use the N, Pu, and Py symbols as placeholders.

The amino acid sequence of a portion of a polypeptide is
N...Cys-Pro-Ala-Met-Gly-His-Lys...C

What is the mRNA sequence encoding this polypeptide fragment? Use N to represent any nucleotide, Pu to represent a purine, and Py to represent a pyrimidine. Label the 5′ and 3′ ends of the mRNA.

Har Gobind Khorana and his colleagues performed numerous experiments translating synthetic mRNAs. In one experiment, an mRNA molecule with a repeating UG dinucleotide sequence was assembled and translated.

If the genetic code were overlapping rather than nonoverlapping, how would the result of this experiment be different?