21. Population Genetics
Allelic Frequency Changes
- Open QuestionTwo populations of deer, one of them large and living in a mainland forest and the other small and inhabiting a forest on an island, regularly exchange members that migrate across a land bridge that connects the island to the mainland.If you compared the allele frequencies in the two populations, what would you expect to find?
- Open QuestionTwo populations of deer, one of them large and living in a mainland forest and the other small and inhabiting a forest on an island, regularly exchange members that migrate across a land bridge that connects the island to the mainland.In which population do you expect to see the greatest allele frequency change? Why?
- Open QuestionDirectional selection presents an apparent paradox. By favoring one allele and disfavoring others, directional selection can lead to fixation (a frequency of 1.0) of the favored allele, after which there is no genetic variation at the locus, and its evolution stops. Explain why directional selection no longer operates in populations after the favored allele reaches fixation.
- Open Question
One of the first Mendelian traits identified in humans was a dominant condition known as brachydactyly. This gene causes an abnormal shortening of the fingers or toes (or both). At the time, some researchers thought that the dominant trait would spread until 75 percent of the population would be affected (because the phenotypic ratio of dominant to recessive is 3 : 1). Show that the reasoning was incorrect.
- Open QuestionWhat is inbreeding depression? Why is inbreeding depression a serious concern for animal biologists involved in species-conservation breeding programs?
- Open QuestionCertain animal species, such as the black-footed ferret, are nearly extinct and currently exist only in captive populations. Other species, such as the panda, are also threatened but exist in the wild thanks to intensive captive breeding programs. What strategies would you suggest in the case of black-footed ferrets and in the case of pandas to monitor and minimize inbreeding depression?
- Open Question
Achondroplasia is a dominant trait that causes a characteristic form of dwarfism. In a survey of 50,000 births, five infants with achondroplasia were identified. Three of the affected infants had affected parents, while two had normal parents. Calculate the mutation rate for achondroplasia and express the rate as the number of mutant genes per given number of gametes.
- Open Question
A recent study examining the mutation rates of 5669 mammalian genes (17,208 sequences) indicates that, contrary to popular belief, mutation rates among lineages with vastly different generation lengths and physiological attributes are remarkably constant [Kumar, S., and Subramanian, S. (2002). Proc. Natl. Acad. Sci. USA 99:803–808]. The average rate is estimated at 12.2×10⁻⁹ per bp per year. What is the significance of this finding in terms of mammalian evolution?
- Open Question
What are considered significant factors in maintaining the surprisingly high levels of genetic variation in natural populations?
- Open Question
A botanist studying water lilies in an isolated pond observed three leaf shapes in the population: round, arrowhead, and scalloped. Marker analysis of DNA from 125 individuals showed the round-leaf plants to be homozygous for allele r1, while the plants with arrowhead leaves were homozygous for a different allele at the same locus, r2. Plants with scalloped leaves showed DNA profiles with both the r1 and r2 alleles. Frequency of the r1 allele was estimated at 0.81. If the botanist counted 20 plants with scalloped leaves in the pond, what is the inbreeding coefficient F for this population?
- Open Question
A farmer plants transgenic Bt corn that is genetically modified to produce its own insecticide. Of the corn borer larvae feeding on these Bt crop plants, only 10 percent survive unless they have at least one copy of the dominant resistance allele B that confers resistance to the Bt insecticide. When the farmer first plants Bt corn, the frequency of the B resistance allele in the corn borer population is 0.02. What will be the frequency of the resistance allele after one generation of corn borers have fed on Bt corn?
- Open Question
In an isolated population of 50 desert bighorn sheep, a mutant recessive allele c when homozygous causes curled coats in both males and females. The normal dominant allele C produces straight coats. A biologist studying these sheep counts four with curled coats. She also takes blood samples from the population for DNA analysis, which reveals that 17 of the sheep are heterozygous carriers of the c allele. What is the inbreeding coefficient F for this population?
- Open QuestionTay–Sachs disease is an autosomal recessive neurological disorder that is fatal in infancy. Despite its invariably lethal effect, Tay–Sachs disease occurs at very high frequency in some Central and Eastern European (Ashkenazi) Jewish populations. In certain Ashkenazi populations, 1 in 750 infants has Tay–Sachs disease. Population biologists believe the high frequency is a consequence of genetic bottlenecks caused by pogroms (genocide) that have reduced the population multiple times in the past several hundred years.Assuming mating occurs at random in this population, what is the probability a couple are both carriers of Tay–Sachs disease?
- Open QuestionTay–Sachs disease is an autosomal recessive neurological disorder that is fatal in infancy. Despite its invariably lethal effect, Tay–Sachs disease occurs at very high frequency in some Central and Eastern European (Ashkenazi) Jewish populations. In certain Ashkenazi populations, 1 in 750 infants has Tay–Sachs disease. Population biologists believe the high frequency is a consequence of genetic bottlenecks caused by pogroms (genocide) that have reduced the population multiple times in the past several hundred years.In the population described, what is the frequency of the recessive allele that produces Tay–Sachs disease?
- Open QuestionTay–Sachs disease is an autosomal recessive neurological disorder that is fatal in infancy. Despite its invariably lethal effect, Tay–Sachs disease occurs at very high frequency in some Central and Eastern European (Ashkenazi) Jewish populations. In certain Ashkenazi populations, 1 in 750 infants has Tay–Sachs disease. Population biologists believe the high frequency is a consequence of genetic bottlenecks caused by pogroms (genocide) that have reduced the population multiple times in the past several hundred years.Explain how a genetic bottleneck and its aftermath could result in a population that carries a lethal allele in high frequency.