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Ch. 20 - Population Genetics and Evolution at the Population, Species, and Molecular Levels
Sanders - Genetic Analysis: An Integrated Approach 3rd Edition
Sanders3rd EditionGenetic Analysis: An Integrated ApproachISBN: 9780135564172Not the one you use?Change textbook
Chapter 20, Problem D.14

The mtDNA sequence of Neanderthals is more similar to that of modern humans than to that of Denisovans. However, analyses of nuclear DNA clearly indicate that Neandertals and Denisovans share a more recent common ancestor than either of these hominins shares with modern humans. Propose a hypothesis to resolve the discrepancy between the mtDNA and the nuclear genome.

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Step 1: Understand the difference between mitochondrial DNA (mtDNA) and nuclear DNA. mtDNA is inherited maternally and does not recombine, while nuclear DNA is inherited from both parents and undergoes recombination, providing a broader picture of ancestry.
Step 2: Recognize that the discrepancy arises because mtDNA shows Neandertals closer to modern humans, whereas nuclear DNA shows Neandertals and Denisovans as more closely related. This suggests different evolutionary histories for mtDNA and nuclear DNA.
Step 3: Consider the possibility of introgression or gene flow events. For example, mtDNA from modern humans could have replaced the original Neandertal mtDNA through interbreeding, leading to Neandertals having mtDNA more similar to modern humans despite their nuclear DNA reflecting a closer relationship to Denisovans.
Step 4: Formulate a hypothesis that explains this pattern, such as a scenario where Neandertals acquired modern human mtDNA via hybridization, while their nuclear genome retained the ancestral relationship with Denisovans.
Step 5: Suggest further analyses to test this hypothesis, such as examining the timing and extent of gene flow events, and comparing additional genetic markers to see if similar patterns exist.

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Key Concepts

Here are the essential concepts you must grasp in order to answer the question correctly.

Mitochondrial DNA (mtDNA) Inheritance

mtDNA is inherited maternally and does not recombine, making it a useful tool for tracing maternal lineages. Because it represents only the maternal ancestry, mtDNA can show different evolutionary relationships compared to nuclear DNA, which is inherited from both parents.
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Nuclear DNA and Phylogenetic Relationships

Nuclear DNA contains the majority of genetic information and is inherited from both parents, reflecting the combined ancestry of an organism. Analyses of nuclear DNA provide a more comprehensive view of evolutionary relationships and can reveal recent common ancestors that mtDNA alone might not detect.
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Introgression and Gene Flow Between Hominin Groups

Introgression refers to the transfer of genetic material between species or populations through hybridization and backcrossing. Gene flow between Neandertals, Denisovans, and modern humans can cause discrepancies between mtDNA and nuclear DNA phylogenies, as mtDNA may reflect past hybridization events or replacement of mitochondrial lineages.
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Related Practice
Textbook Question

Two populations of deer, one of them large and living in a mainland forest and the other small and inhabiting a forest on an island, regularly exchange members that migrate across a land bridge that connects the island to the mainland. An earthquake destroys the bridge between the island and the mainland, making migration impossible for the deer. What do you expect will happen to allele frequencies in the two populations over the following 10 generations?

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Textbook Question

Two populations of deer, one of them large and living in a mainland forest and the other small and inhabiting a forest on an island, regularly exchange members that migrate across a land bridge that connects the island to the mainland. In which population do you expect to see the greatest allele frequency change? Why?

Textbook Question
Directional selection presents an apparent paradox. By favoring one allele and disfavoring others, directional selection can lead to fixation (a frequency of 1.0) of the favored allele, after which there is no genetic variation at the locus, and its evolution stops. Explain why directional selection no longer operates in populations after the favored allele reaches fixation.
Textbook Question
What is inbreeding depression? Why is inbreeding depression a serious concern for animal biologists involved in species-conservation breeding programs?
Textbook Question

If you were to compare your genome sequence with that of your parents, how would it differ? If you were to compare your genome sequence with another student's in the class, how would it differ? What additional difference might you see if your genome was compared with that of a sub-Saharan African, or if you are of sub-Saharan African descent, with that of a non-African?

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Textbook Question

Certain animal species, such as the black-footed ferret, are nearly extinct and currently exist only in captive populations. Other species, such as the panda, are also threatened but exist in the wild thanks to intensive captive breeding programs. What strategies would you suggest in the case of black-footed ferrets and in the case of pandas to monitor and minimize inbreeding depression?